Bacterial succession in oil-contaminated soil under phytoremediation with poplars.
Identifieur interne : 000549 ( Main/Exploration ); précédent : 000548; suivant : 000550Bacterial succession in oil-contaminated soil under phytoremediation with poplars.
Auteurs : Eglantina Lopez-Echartea [République tchèque] ; Michal Strejcek [République tchèque] ; Shinjini Mukherjee [Belgique] ; Ondrej Uhlik [République tchèque] ; Kim Yrj L [République populaire de Chine]Source :
- Chemosphere [ 1879-1298 ] ; 2020.
Descripteurs français
- KwdFr :
- ARN ribosomique 16S (génétique), Assainissement et restauration de l'environnement (méthodes), Bactéries (génétique), Consortiums microbiens (génétique), Dépollution biologique de l'environnement (MeSH), Finlande (MeSH), Hydrocarbures (analyse), Hydrocarbures (métabolisme), Microbiologie du sol (MeSH), Polluants du sol (analyse), Polluants du sol (métabolisme), Pollution pétrolière (MeSH), Populus (MeSH), Rhizosphère (MeSH).
- MESH :
- analyse : Hydrocarbures, Polluants du sol.
- génétique : ARN ribosomique 16S, Bactéries, Consortiums microbiens.
- métabolisme : Hydrocarbures, Polluants du sol.
- méthodes : Assainissement et restauration de l'environnement.
- Dépollution biologique de l'environnement, Finlande, Microbiologie du sol, Pollution pétrolière, Populus, Rhizosphère.
- Wicri :
- geographic : Finlande.
English descriptors
- KwdEn :
- Bacteria (genetics), Biodegradation, Environmental (MeSH), Environmental Restoration and Remediation (methods), Finland (MeSH), Hydrocarbons (analysis), Hydrocarbons (metabolism), Microbial Consortia (genetics), Petroleum Pollution (MeSH), Populus (MeSH), RNA, Ribosomal, 16S (genetics), Rhizosphere (MeSH), Soil Microbiology (MeSH), Soil Pollutants (analysis), Soil Pollutants (metabolism).
- MESH :
- chemical , analysis : Hydrocarbons, Soil Pollutants.
- chemical , genetics : RNA, Ribosomal, 16S.
- chemical , metabolism : Hydrocarbons, Soil Pollutants.
- geographic : Finland.
- genetics : Bacteria, Microbial Consortia.
- methods : Environmental Restoration and Remediation.
- Biodegradation, Environmental, Petroleum Pollution, Populus, Rhizosphere, Soil Microbiology.
Abstract
Petroleum hydrocarbons (PHCs) continue to be among the most common pollutants in soil worldwide. Phytoremediation has become a sustainable way of dealing with PHC contamination. We conducted the off-site phytoremediation of PHC-polluted soil from an oil tanker truck accident, where poplars were used for the phytoremediation of the oil-polluted soil in a boreal climate during a seven-year treatment. The succession of bacterial communities over the entire phytoremediation process was monitored using microbial ecological tools relying on high-throughput 16S rRNA gene sequencing. Upon the successful depletion of PHCs from soil, endophytic communities were analyzed in order to assess the complete plant-associated microbiome after the ecological recovery. The rhizosphere-associated soil exhibited different bacterial dynamics than unplanted soil, but both soils experienced succession of bacteria over time, with diversity being negatively correlated with PHC concentration. In the relatively short growing season in North Europe, seasonal variations in environmental conditions were identified that contributed to the dynamics of bacterial communities. Overall, our study proved that phytoremediation using poplar trees can be used to assist in the removal of PHCs from soils in boreal climate conditions and provides new insight into the succession patterns of bacterial communities associated with these plants.
DOI: 10.1016/j.chemosphere.2019.125242
PubMed: 31995861
Affiliations:
- Belgique, République populaire de Chine, République tchèque
- Bohême centrale, Uusimaa
- Helsinki, Prague
- Université d'Helsinki
Links toward previous steps (curation, corpus...)
Le document en format XML
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Electronic address: kim.yrjala@helsinki.fi.</nlm:affiliation><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>University of Helsinki, Department of Forest Sciences, Helsinki, Finland; Zhejiang A&F University, State Key Laboratory of Subtropical Silviculture, Zhejiang</wicri:regionArea><orgName type="university">Université d'Helsinki</orgName><placeName><settlement type="city">Helsinki</settlement><region type="région" nuts="2">Uusimaa</region></placeName></affiliation></author></titleStmt><publicationStmt><idno type="wicri:source">PubMed</idno><date when="2020">2020</date><idno type="RBID">pubmed:31995861</idno><idno type="pmid">31995861</idno><idno type="doi">10.1016/j.chemosphere.2019.125242</idno><idno type="wicri:Area/Main/Corpus">000495</idno><idno type="wicri:explorRef" wicri:stream="Main" wicri:step="Corpus" wicri:corpus="PubMed">000495</idno><idno type="wicri:Area/Main/Curation">000495</idno><idno type="wicri:explorRef" wicri:stream="Main" wicri:step="Curation">000495</idno><idno type="wicri:Area/Main/Exploration">000495</idno></publicationStmt><sourceDesc><biblStruct><analytic><title xml:lang="en">Bacterial succession in oil-contaminated soil under phytoremediation with poplars.</title><author><name sortKey="Lopez Echartea, Eglantina" sort="Lopez Echartea, Eglantina" uniqKey="Lopez Echartea E" first="Eglantina" last="Lopez-Echartea">Eglantina Lopez-Echartea</name><affiliation wicri:level="3"><nlm:affiliation>University of Chemistry and Technology, Prague, Faculty of Food and Biochemical Technology, Department of Biochemistry and Microbiology, Prague, Czech Republic.</nlm:affiliation><country xml:lang="fr">République tchèque</country><wicri:regionArea>University of Chemistry and Technology, Prague, Faculty of Food and Biochemical Technology, Department of Biochemistry and Microbiology, Prague</wicri:regionArea><placeName><settlement type="city">Prague</settlement><region type="région" nuts="2">Bohême centrale</region></placeName></affiliation></author><author><name sortKey="Strejcek, Michal" sort="Strejcek, Michal" uniqKey="Strejcek M" first="Michal" last="Strejcek">Michal Strejcek</name><affiliation wicri:level="3"><nlm:affiliation>University of Chemistry and Technology, Prague, Faculty of Food and Biochemical Technology, Department of Biochemistry and Microbiology, Prague, Czech Republic.</nlm:affiliation><country xml:lang="fr">République tchèque</country><wicri:regionArea>University of Chemistry and Technology, Prague, Faculty of Food and Biochemical Technology, Department of Biochemistry and Microbiology, Prague</wicri:regionArea><placeName><settlement type="city">Prague</settlement><region type="région" nuts="2">Bohême centrale</region></placeName></affiliation></author><author><name sortKey="Mukherjee, Shinjini" sort="Mukherjee, Shinjini" uniqKey="Mukherjee S" first="Shinjini" last="Mukherjee">Shinjini Mukherjee</name><affiliation wicri:level="1"><nlm:affiliation>KU Leuven, Laboratory of Aquatic Ecology, Evolution and Conservation, Leuven, Belgium.</nlm:affiliation><country xml:lang="fr">Belgique</country><wicri:regionArea>KU Leuven, Laboratory of Aquatic Ecology, Evolution and Conservation, Leuven</wicri:regionArea><wicri:noRegion>Leuven</wicri:noRegion></affiliation></author><author><name sortKey="Uhlik, Ondrej" sort="Uhlik, Ondrej" uniqKey="Uhlik O" first="Ondrej" last="Uhlik">Ondrej Uhlik</name><affiliation wicri:level="3"><nlm:affiliation>University of Chemistry and Technology, Prague, Faculty of Food and Biochemical Technology, Department of Biochemistry and Microbiology, Prague, Czech Republic.</nlm:affiliation><country xml:lang="fr">République tchèque</country><wicri:regionArea>University of Chemistry and Technology, Prague, Faculty of Food and Biochemical Technology, Department of Biochemistry and Microbiology, Prague</wicri:regionArea><placeName><settlement type="city">Prague</settlement><region type="région" nuts="2">Bohême centrale</region></placeName></affiliation></author><author><name sortKey="Yrj L, Kim" sort="Yrj L, Kim" uniqKey="Yrj L K" first="Kim" last="Yrj L">Kim Yrj L</name><affiliation wicri:level="4"><nlm:affiliation>University of Helsinki, Department of Forest Sciences, Helsinki, Finland; Zhejiang A&F University, State Key Laboratory of Subtropical Silviculture, Zhejiang, China. Electronic address: kim.yrjala@helsinki.fi.</nlm:affiliation><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>University of Helsinki, Department of Forest Sciences, Helsinki, Finland; Zhejiang A&F University, State Key Laboratory of Subtropical Silviculture, Zhejiang</wicri:regionArea><orgName type="university">Université d'Helsinki</orgName><placeName><settlement type="city">Helsinki</settlement><region type="région" nuts="2">Uusimaa</region></placeName></affiliation></author></analytic><series><title level="j">Chemosphere</title><idno type="eISSN">1879-1298</idno><imprint><date when="2020" type="published">2020</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass><keywords scheme="KwdEn" xml:lang="en"><term>Bacteria (genetics)</term><term>Biodegradation, Environmental (MeSH)</term><term>Environmental Restoration and Remediation (methods)</term><term>Finland (MeSH)</term><term>Hydrocarbons (analysis)</term><term>Hydrocarbons (metabolism)</term><term>Microbial Consortia (genetics)</term><term>Petroleum Pollution (MeSH)</term><term>Populus (MeSH)</term><term>RNA, Ribosomal, 16S (genetics)</term><term>Rhizosphere (MeSH)</term><term>Soil Microbiology (MeSH)</term><term>Soil Pollutants (analysis)</term><term>Soil Pollutants (metabolism)</term></keywords><keywords scheme="KwdFr" xml:lang="fr"><term>ARN ribosomique 16S (génétique)</term><term>Assainissement et restauration de l'environnement (méthodes)</term><term>Bactéries (génétique)</term><term>Consortiums microbiens (génétique)</term><term>Dépollution biologique de l'environnement (MeSH)</term><term>Finlande (MeSH)</term><term>Hydrocarbures (analyse)</term><term>Hydrocarbures (métabolisme)</term><term>Microbiologie du sol (MeSH)</term><term>Polluants du sol (analyse)</term><term>Polluants du sol (métabolisme)</term><term>Pollution pétrolière (MeSH)</term><term>Populus (MeSH)</term><term>Rhizosphère (MeSH)</term></keywords><keywords scheme="MESH" type="chemical" qualifier="analysis" xml:lang="en"><term>Hydrocarbons</term><term>Soil Pollutants</term></keywords><keywords scheme="MESH" type="chemical" qualifier="genetics" xml:lang="en"><term>RNA, Ribosomal, 16S</term></keywords><keywords scheme="MESH" type="chemical" qualifier="metabolism" xml:lang="en"><term>Hydrocarbons</term><term>Soil Pollutants</term></keywords><keywords scheme="MESH" type="geographic" xml:lang="en"><term>Finland</term></keywords><keywords scheme="MESH" qualifier="analyse" xml:lang="fr"><term>Hydrocarbures</term><term>Polluants du sol</term></keywords><keywords scheme="MESH" qualifier="genetics" xml:lang="en"><term>Bacteria</term><term>Microbial Consortia</term></keywords><keywords scheme="MESH" qualifier="génétique" xml:lang="fr"><term>ARN ribosomique 16S</term><term>Bactéries</term><term>Consortiums microbiens</term></keywords><keywords scheme="MESH" qualifier="methods" xml:lang="en"><term>Environmental Restoration and Remediation</term></keywords><keywords scheme="MESH" qualifier="métabolisme" xml:lang="fr"><term>Hydrocarbures</term><term>Polluants du sol</term></keywords><keywords scheme="MESH" qualifier="méthodes" xml:lang="fr"><term>Assainissement et restauration de l'environnement</term></keywords><keywords scheme="MESH" xml:lang="en"><term>Biodegradation, Environmental</term><term>Petroleum Pollution</term><term>Populus</term><term>Rhizosphere</term><term>Soil Microbiology</term></keywords><keywords scheme="MESH" xml:lang="fr"><term>Dépollution biologique de l'environnement</term><term>Finlande</term><term>Microbiologie du sol</term><term>Pollution pétrolière</term><term>Populus</term><term>Rhizosphère</term></keywords><keywords scheme="Wicri" type="geographic" xml:lang="fr"><term>Finlande</term></keywords></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en">Petroleum hydrocarbons (PHCs) continue to be among the most common pollutants in soil worldwide. Phytoremediation has become a sustainable way of dealing with PHC contamination. We conducted the off-site phytoremediation of PHC-polluted soil from an oil tanker truck accident, where poplars were used for the phytoremediation of the oil-polluted soil in a boreal climate during a seven-year treatment. The succession of bacterial communities over the entire phytoremediation process was monitored using microbial ecological tools relying on high-throughput 16S rRNA gene sequencing. Upon the successful depletion of PHCs from soil, endophytic communities were analyzed in order to assess the complete plant-associated microbiome after the ecological recovery. The rhizosphere-associated soil exhibited different bacterial dynamics than unplanted soil, but both soils experienced succession of bacteria over time, with diversity being negatively correlated with PHC concentration. In the relatively short growing season in North Europe, seasonal variations in environmental conditions were identified that contributed to the dynamics of bacterial communities. Overall, our study proved that phytoremediation using poplar trees can be used to assist in the removal of PHCs from soils in boreal climate conditions and provides new insight into the succession patterns of bacterial communities associated with these plants.</div></front></TEI><pubmed><MedlineCitation Status="MEDLINE" IndexingMethod="Curated" Owner="NLM"><PMID Version="1">31995861</PMID><DateCompleted><Year>2020</Year><Month>03</Month><Day>31</Day></DateCompleted><DateRevised><Year>2020</Year><Month>03</Month><Day>31</Day></DateRevised><Article PubModel="Print-Electronic"><Journal><ISSN IssnType="Electronic">1879-1298</ISSN><JournalIssue CitedMedium="Internet"><Volume>243</Volume><PubDate><Year>2020</Year><Month>Mar</Month></PubDate></JournalIssue><Title>Chemosphere</Title><ISOAbbreviation>Chemosphere</ISOAbbreviation></Journal><ArticleTitle>Bacterial succession in oil-contaminated soil under phytoremediation with poplars.</ArticleTitle><Pagination><MedlinePgn>125242</MedlinePgn></Pagination><ELocationID EIdType="pii" ValidYN="Y">S0045-6535(19)32482-8</ELocationID><ELocationID EIdType="doi" ValidYN="Y">10.1016/j.chemosphere.2019.125242</ELocationID><Abstract><AbstractText>Petroleum hydrocarbons (PHCs) continue to be among the most common pollutants in soil worldwide. Phytoremediation has become a sustainable way of dealing with PHC contamination. We conducted the off-site phytoremediation of PHC-polluted soil from an oil tanker truck accident, where poplars were used for the phytoremediation of the oil-polluted soil in a boreal climate during a seven-year treatment. The succession of bacterial communities over the entire phytoremediation process was monitored using microbial ecological tools relying on high-throughput 16S rRNA gene sequencing. Upon the successful depletion of PHCs from soil, endophytic communities were analyzed in order to assess the complete plant-associated microbiome after the ecological recovery. The rhizosphere-associated soil exhibited different bacterial dynamics than unplanted soil, but both soils experienced succession of bacteria over time, with diversity being negatively correlated with PHC concentration. In the relatively short growing season in North Europe, seasonal variations in environmental conditions were identified that contributed to the dynamics of bacterial communities. Overall, our study proved that phytoremediation using poplar trees can be used to assist in the removal of PHCs from soils in boreal climate conditions and provides new insight into the succession patterns of bacterial communities associated with these plants.</AbstractText><CopyrightInformation>Copyright © 2019 Elsevier Ltd. All rights reserved.</CopyrightInformation></Abstract><AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Lopez-Echartea</LastName><ForeName>Eglantina</ForeName><Initials>E</Initials><AffiliationInfo><Affiliation>University of Chemistry and Technology, Prague, Faculty of Food and Biochemical Technology, Department of Biochemistry and Microbiology, Prague, Czech Republic.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Strejcek</LastName><ForeName>Michal</ForeName><Initials>M</Initials><AffiliationInfo><Affiliation>University of Chemistry and Technology, Prague, Faculty of Food and Biochemical Technology, Department of Biochemistry and Microbiology, Prague, Czech Republic.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Mukherjee</LastName><ForeName>Shinjini</ForeName><Initials>S</Initials><AffiliationInfo><Affiliation>KU Leuven, Laboratory of Aquatic Ecology, Evolution and Conservation, Leuven, Belgium.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Uhlik</LastName><ForeName>Ondrej</ForeName><Initials>O</Initials><AffiliationInfo><Affiliation>University of Chemistry and Technology, Prague, Faculty of Food and Biochemical Technology, Department of Biochemistry and Microbiology, Prague, Czech Republic.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Yrjälä</LastName><ForeName>Kim</ForeName><Initials>K</Initials><AffiliationInfo><Affiliation>University of Helsinki, Department of Forest Sciences, Helsinki, Finland; Zhejiang A&F University, State Key Laboratory of Subtropical Silviculture, Zhejiang, China. Electronic address: kim.yrjala@helsinki.fi.</Affiliation></AffiliationInfo></Author></AuthorList><Language>eng</Language><PublicationTypeList><PublicationType UI="D016428">Journal Article</PublicationType></PublicationTypeList><ArticleDate DateType="Electronic"><Year>2019</Year><Month>10</Month><Day>31</Day></ArticleDate></Article><MedlineJournalInfo><Country>England</Country><MedlineTA>Chemosphere</MedlineTA><NlmUniqueID>0320657</NlmUniqueID><ISSNLinking>0045-6535</ISSNLinking></MedlineJournalInfo><ChemicalList><Chemical><RegistryNumber>0</RegistryNumber><NameOfSubstance UI="D006838">Hydrocarbons</NameOfSubstance></Chemical><Chemical><RegistryNumber>0</RegistryNumber><NameOfSubstance UI="D012336">RNA, Ribosomal, 16S</NameOfSubstance></Chemical><Chemical><RegistryNumber>0</RegistryNumber><NameOfSubstance UI="D012989">Soil Pollutants</NameOfSubstance></Chemical></ChemicalList><CitationSubset>IM</CitationSubset><MeshHeadingList><MeshHeading><DescriptorName UI="D001419" MajorTopicYN="Y">Bacteria</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D001673" MajorTopicYN="N">Biodegradation, Environmental</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D052918" MajorTopicYN="N">Environmental Restoration and Remediation</DescriptorName><QualifierName UI="Q000379" MajorTopicYN="N">methods</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D005387" MajorTopicYN="N" Type="Geographic">Finland</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D006838" MajorTopicYN="N">Hydrocarbons</DescriptorName><QualifierName UI="Q000032" MajorTopicYN="N">analysis</QualifierName><QualifierName UI="Q000378" MajorTopicYN="N">metabolism</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D059013" MajorTopicYN="N">Microbial Consortia</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D059392" MajorTopicYN="Y">Petroleum Pollution</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D032107" MajorTopicYN="Y">Populus</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D012336" MajorTopicYN="N">RNA, Ribosomal, 16S</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D058441" MajorTopicYN="N">Rhizosphere</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D012988" MajorTopicYN="Y">Soil Microbiology</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D012989" MajorTopicYN="N">Soil Pollutants</DescriptorName><QualifierName UI="Q000032" MajorTopicYN="N">analysis</QualifierName><QualifierName UI="Q000378" MajorTopicYN="N">metabolism</QualifierName></MeshHeading></MeshHeadingList><KeywordList Owner="NOTNLM"><Keyword MajorTopicYN="N">Bacterial secondary succession</Keyword><Keyword MajorTopicYN="N">Endophytes</Keyword><Keyword MajorTopicYN="N">Petroleum hydrocarbons</Keyword><Keyword MajorTopicYN="N">Phytoremediation</Keyword><Keyword MajorTopicYN="N">Populus</Keyword></KeywordList></MedlineCitation><PubmedData><History><PubMedPubDate PubStatus="received"><Year>2019</Year><Month>08</Month><Day>15</Day></PubMedPubDate><PubMedPubDate PubStatus="revised"><Year>2019</Year><Month>10</Month><Day>13</Day></PubMedPubDate><PubMedPubDate PubStatus="accepted"><Year>2019</Year><Month>10</Month><Day>26</Day></PubMedPubDate><PubMedPubDate PubStatus="entrez"><Year>2020</Year><Month>1</Month><Day>31</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate PubStatus="pubmed"><Year>2020</Year><Month>1</Month><Day>31</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate PubStatus="medline"><Year>2020</Year><Month>4</Month><Day>1</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate></History><PublicationStatus>ppublish</PublicationStatus><ArticleIdList><ArticleId IdType="pubmed">31995861</ArticleId><ArticleId IdType="pii">S0045-6535(19)32482-8</ArticleId><ArticleId IdType="doi">10.1016/j.chemosphere.2019.125242</ArticleId></ArticleIdList></PubmedData></pubmed><affiliations><list><country><li>Belgique</li><li>République populaire de Chine</li><li>République tchèque</li></country><region><li>Bohême centrale</li><li>Uusimaa</li></region><settlement><li>Helsinki</li><li>Prague</li></settlement><orgName><li>Université d'Helsinki</li></orgName></list><tree><country name="République tchèque"><region name="Bohême centrale"><name sortKey="Lopez Echartea, Eglantina" sort="Lopez Echartea, Eglantina" uniqKey="Lopez Echartea E" first="Eglantina" last="Lopez-Echartea">Eglantina Lopez-Echartea</name></region><name sortKey="Strejcek, Michal" sort="Strejcek, Michal" uniqKey="Strejcek M" first="Michal" last="Strejcek">Michal Strejcek</name><name sortKey="Uhlik, Ondrej" sort="Uhlik, Ondrej" uniqKey="Uhlik O" first="Ondrej" last="Uhlik">Ondrej Uhlik</name></country><country name="Belgique"><noRegion><name sortKey="Mukherjee, Shinjini" sort="Mukherjee, Shinjini" uniqKey="Mukherjee S" first="Shinjini" last="Mukherjee">Shinjini Mukherjee</name></noRegion></country><country name="République populaire de Chine"><region name="Uusimaa"><name sortKey="Yrj L, Kim" sort="Yrj L, Kim" uniqKey="Yrj L K" first="Kim" last="Yrj L">Kim Yrj L</name></region></country></tree></affiliations></record>Pour manipuler ce document sous Unix (Dilib)
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